Welcome to PAD (Proximal and Distal) clustering

Quick start guide:

1. Select the peaks from the database by clicking the green button.
2. Select the genes annotation to compare the peaks against to.
3. Choose your file to upload and compare against the database.
4. Select the cut-off value which will be the threshold to separate 'proximal' and 'distal'.
5. Click Submit.

Download sample BED file
To cite the use of PAD clustering:
Pengyi Yang, Andrew Oldfield, Taiyun Kim, Andrian Yang, Jean Yee Hwa Yang, Joshua W. K. Ho; Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells. Bioinformatics 2017; 33 (13): 1916-1920. doi: 10.1093/bioinformatics/btx092